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AntiChess - An anti chess game written in Java. It supports 2 player and 4 player games on the same board. [MIT License]
BigAl - Java application for calculating really BIG numbers. [Open Source, GPL]
Double Choco Latte - Project to create a solution for managing some IT departments including software development and call center activity. It has a web interface and will also have a stand-alone Java client. [Open Source, GPL]
Elixir Report - A reporting tool supporting data sources including Java/EJB, XML, JDBC, LDAP, and text, with multi-locale internationalization, scripting, and J2EE integration. [Commercial]
HALLoGRAM - Catalogue commercial Java programs and training tools.
JabaDex - Cross-platform Personal Information Manager. [Open Source, BSD-like]
Jafs - Directory of freeware and open source Java applications.
Java Archives - Free Java applications, applets, and beans archive.
Java.com - A resource for Java technology consumers, with a focus on Games.
JavaShareware.com - Listed applications include Java applications, Servlets, Beans and other Java projects.
JChessBoard - Chess game, user against computer or user against other human via the Internet; Java 1.2 required. [Freeware, GPL]
JCye - Cye robot controller software. [Freeware]
Jeppers - A full featured web-based spreadsheet editor written in Java. It also provides a grid component that can be used in Swing applications. [Open source, GPL]
Jess - A Java Expert System Shell and scripting environment. [Commercial]
Linux-Kontor - Free business management software. Despite the name, this is written in Java and will run on any Java virtual machine. [Open Source, LGPL]
MC4J - Allows management and monitoring of applications supporting the JMX specification, providing live graphing and customizable interfaces. [Open source, Apache License]
m-e-c eagle - JAVA XML B2B integration software. Features a Swing-based GUI, converters for EDI to XML, XML to XML and XML to EDI, client-server architecture. All EDI standards are supported: EDIFACT, ANSI X.12, SAP IDOC, XCBL, RosettaNet, Biztalk. Supported protocols: SMTP, FTP, HTTP(S), PGP/MIME. [Open Source, Mozilla Public License]
MindRaider - A Semantic Web outliner/cognition organizer/mind mapper and RDF browser/editor. [Open source, GPL]
NumericalChameleon - Java 2 Application for converting numbers (radixes, phys. units, Roman numbers, spoken numbers, exchange rates). [Open Source, GPL]
Sharp Tools Software's Spreadsheet - 100% Java and Excel compatible.
ThinkFree Office - Java-based word processor, spreadsheet, presentation package that offers Microsoft Office compatibility.
VisualVersion - BusyTime time management application, and BackupSW practical file backup solution. [Commercial]

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